(graduate student advisee, *undergraduate advisee, †corresponding author when not first author) 2025 Rudgers JA, CA Gehring, DL Taylor, MD Taylor, YA Chung. (2025) The integration of plant-soil feedbacks with resilience theory. Trends in Ecology and Evolution. Accepted. Torres, I., S. Zhang, A. Bouffier, M. Skaro, Yue Wu, L. Stupp, T. Pendergrast, J. Arnold, YA Chung, H.-B Schuttler. (2025) MINE: a new way to design genetics experiments for discovery. Briefings in Bioinformatics 26(2):bbaf167. *Jooma NJ, PB Bentz, KB McCrum, *Z Solis, †YA Chung. (2025) Fungal endophyte communities differ between leaves and roots of Agave utahensis. International Journal of Plant Sciences. In press. 2023 Chung YA, PJ Ke, PB Adler. Mechanistic approaches to investigate soil microbe-mediated plant competition. Journal of Ecology 111: 1590-1597. Chung YA, TA Monaco, JB Taylor, PB Adler. (2023) Do plant-soil feedbacks maintain coexistence in a sagebrush steppe? Ecology e4056. YA Chung. The temporal and spatial dimensions of plant-soil feedbacks. (2023) New Phytologist 237: 2012–2019. 2022 Louw N, LA Gherardi, OE Sala, YA Chung. Dryland soil mycobiome response to long-term precipitation variability depends on host type. (2022) Journal of Ecology 110: 2984-2997. Li D, YA Chung among 21 coauthors. (2022) Standardized NEON organismal data for biodiversity research. Ecosphere. 13: e4141. Rudgers JA, S Fox, A Porras-Alfaro, J Herrera, C Reazin, D Kent, L Souza, YA Chung, A Jumpponen. (2022) Biogeography of root-associated fungi in foundation grasses of the North American plains. Journal of Biogeography 49:22-37. 2021 Qin C, R Bartelme, YA Chung, D Fairbanks, Y Lin, D Liptzin, C Muscarella, K Naithani, K Peay, P Pellitier, A St. Rose, L Stanish, Z Werbin, K Zhu. (2021) From DNA sequences to microbial ecology: Wrangling NEON soil microbe data with the neonMicrobe R package. Ecosphere 12: e03842. Nagy RC, YA Chung among 118 coauthors. (2021) Harnessing the NEON data revolution to advance open environmental science with a diverse and data-capable community. Ecosphere 12:e03833. 2020 Lagueux D, A Jumpponen, A Porras-Alfaro, J Herrera, YA Chung, LE Baur, MD Smith, AK Knapp, SL Collins, JA Rudgers. (2020) Effects of experimental drought on plant host-dependent fungal rhizobiomes in North American grasslands. Journal of Ecology 109:776-792. Herrera J, RE Haskew-Layton, M Narayanan, A Porras-Alfaro, A Jumpponen, YA Chung, JA Rudgers. (2020) Improving instructional “fitness” requires change. Bioscience 70:1027-1035. Rudgers JA, M Afkhami, L Bell-Dereske, YA Chung, KM Crawford, SN Kivlin, M Mann, M Nuñez. (2020) Climate disruption of plant-microbe interactions. Annual Review of Ecology, Evolution, and Systematics 51:1. Collins SL, YA Chung, LE Baur, A Hallmark, TJ Ohlert, JA Rudgers. (2020) Press-pulse interactions and long-term community dynamics in a Chihuahuan Desert grassland. Journal of Vegetation Science In press. 2019 Chung, YA, *B Thornton, E Dettweiler-Robinson, JA Rudgers. (2019) Soil surface disturbance alters cyanobacterial biocrusts and soil properties in dry grassland and shrubland ecosystems. Plant and Soil 441:147-159 Chung, YA, SL Collins, JA Rudgers. (2019) Connecting plant-soil feedbacks to long-term stability in a desert grassland. Ecology 100:e02756. Chung, YA, A. Jumpponen, JA Rudgers. (2019) Divergence in diversity and composition of root-associated fungi between greenhouse and field studies in a semiarid grassland. Microbial Ecology 78:122-135. 2018 *Carlton L, *NC Dunkirk, †YA Chung, JA Rudgers. (2018) Plant-microbe interactions as a cause of ring formation in Bouteloua gracilis. Journal of Arid Environments 152:1-5. Rudgers, JA, YA Chung, GE Maurer, DI Moore, EH muldavin, ME Litvak, SL Collins (2018) Climate sensitivity functions and net primary production: A framework for incorporating climate mean and variability. Ecology 99:576-582. 2017 Chung YA, RL Sinsabaugh, CR Kuske, SC Reed, JA Rudgers (2017) Spatial variation in edaphic characteristics is a stronger control than nitrogen inputs in regulating soil microbial effects on a desert grass. Journal of Arid Environments 142:59-65. 2016 Chung, YA, JA Rudgers (2016) Plant-soil feedbacks promote negative frequency dependence in the coexistence of two aridland grasses. Proceedings of the Royal Society B: Biological Sciences 283:20160608. 2015 Chung, YA, TEX Miller, JA Rudgers. (2015) Fungal symbionts maintain a rare plant population but demographic advantage drives the dominance of a common host. Journal of Ecology 103:967-977. Kazenel, MR, C Debban, L Ranelli, W Hendricks, YA Chung, T Pendergast, N Charlton, C Young, JA Rudger (2015). A mutualistic endophyte alters the niche dimensions of its host plant. Annals of Botany: Plants 7: plv005. 2014 and earlier Chung, YA, LA Burkle, TM Knight (2014). Minimal effects of invasive flowering shrub on pollination ecology of native plant species. PLoS ONE 9(10): e109088. Burns, JH, EA Pardini, MR Schutzenhofer, YA Chung, KJ Seidler, TM Knight (2013). Greater sexual reproduction contributes to differences in demography of invasive plants and their noninvasive relatives. Ecology 94:995–1004.
